Honestly, I still see the theme park as a movie studio first. I would always start with the tram. Let the attractions build up, otherwise you get the cool stuff done first and you don't feel the sense of excitement or "wow factor" because you just started your day. The Studio Tour allows for a great build up for more cool things to come. Plus why leave the poor attractions for last when it will leave a poor taste in your mouth when you leave?
I suggest:
Studio Tour
Jurassic Park
Mummy
Transformers
Simpsons
LUNCH
Waterworld
Despicable Me
SES
Shrek